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Fix runtime errors and improve robustness in host configs and scripts

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- Fix KeyError in julia.nix when Project.toml lacks deps table
- Fix incorrect uv args in python.nix (remove --run + --add-flags combination)
- Remove redundant 'uv add ipython' from sync branch in python.nix
- Fix relative paths in project-scripts.nix (./scripts -> ../scripts)
- Fix initProject.sh to check file existence before git add
- Add RVER validation in updateDeps.sh with proper error handling
- Add tool availability checks in updateDeps.sh (uv, julia, devenv)
- Add flake.nix backup before modification in updateDeps.sh
- Ensure updateDeps.sh runs from repository root

Co-authored-by: dwinkler1 <22460147+dwinkler1@users.noreply.github.com>
This commit is contained in:
copilot-swe-agent[bot] 2026-01-11 19:48:19 +00:00
commit 2a5a1acd62
5 changed files with 84 additions and 38 deletions
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25
templates/rde/scripts/initProject.sh
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@ -44,15 +44,24 @@ fi
# Initialize git
if [[ ! -d ".git" ]]; then
git init
echo "✓ Initialized Git repository and added: flake.nix, flake.lock"
echo "✓ Initialized Git repository"
fi
# Check if files are already staged/tracked before adding
if ! git diff --cached --name-only | grep -q "flake.nix\|flake.lock" &&
! git ls-files --error-unmatch flake.nix flake.lock >/dev/null 2>&1; then
echo "✓ Adding flake.nix, flake.lock to Git repository"
git add flake.nix flake.lock
else
echo "✓ flake.nix, flake.lock already tracked/staged in Git"
# Check if files exist and are not already staged/tracked before adding
if [[ -f "flake.nix" ]] && ! git diff --cached --name-only 2>/dev/null | grep -q "flake.nix" &&
! git ls-files --error-unmatch flake.nix >/dev/null 2>&1; then
echo "✓ Adding flake.nix to Git repository"
git add flake.nix
elif [[ -f "flake.nix" ]]; then
echo "✓ flake.nix already tracked/staged in Git"
fi
if [[ -f "flake.lock" ]] && ! git diff --cached --name-only 2>/dev/null | grep -q "flake.lock" &&
! git ls-files --error-unmatch flake.lock >/dev/null 2>&1; then
echo "✓ Adding flake.lock to Git repository"
git add flake.lock
elif [[ -f "flake.lock" ]]; then
echo "✓ flake.lock already tracked/staged in Git"
fi
# Create .gitignore
if [[ ! -f ".gitignore" ]]; then