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Add comprehensive inline documentation to all modules and enhance README

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Co-authored-by: dwinkler1 <22460147+dwinkler1@users.noreply.github.com>
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copilot-swe-agent[bot] 2026-01-11 19:40:13 +00:00
commit 40095ac868
13 changed files with 587 additions and 32 deletions
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25
templates/rde/overlays/project-scripts.nix
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@ -1,14 +1,39 @@
# Project scripts overlay
#
# This overlay wraps shell scripts from the scripts/ directory as Nix packages.
# Scripts are made available as executable commands with the project name prefix.
#
# How it works:
# 1. Reads shell scripts from scripts/ directory
# 2. Substitutes @defaultPackageName@ with actual package name
# 3. Creates executable packages via writeShellScriptBin
# 4. Scripts become available as: <packageName>-<scriptName>
#
# Available scripts:
# - initPython: Initialize Python project with uv
# - initProject: Set up project directory structure
# - updateDeps: Update all dependencies (R, Python, Julia, flake)
# - activateDevenv: Activate devenv shell if available
#
# Usage: Scripts are automatically available in the dev shell
config: final: prev: let
# Helper function to substitute config placeholders in scripts
# Replaces @defaultPackageName@ with the actual package name from config
substituteScript = scriptPath:
prev.lib.replaceStrings
["@defaultPackageName@"]
[config.defaultPackageName]
(builtins.readFile scriptPath);
in {
# Python project initialization (creates pyproject.toml, adds packages)
initPython = prev.writeShellScriptBin "initPython" (substituteScript ./scripts/initPython.sh);
# Project structure setup (creates directories, git repo, .gitignore)
initProject = prev.writeShellScriptBin "initProject" (substituteScript ./scripts/initProject.sh);
# Update all dependencies (R packages, Python packages, flake inputs)
updateDeps = prev.writeShellScriptBin "updateDeps" (substituteScript ./scripts/updateDeps.sh);
# Activate devenv environment if devenv.nix exists
activateDevenv = prev.writeShellScriptBin "activateDevenv" (substituteScript ./scripts/activateDevenv.sh);
}