diff --git a/.github/workflows/update.yml b/.github/workflows/update.yml
index bbf87cf..0b07ad0 100644
--- a/.github/workflows/update.yml
+++ b/.github/workflows/update.yml
@@ -13,10 +13,19 @@ jobs:
         uses: actions/checkout@v4
       - name: Install Determinate Nix
         uses: DeterminateSystems/determinate-nix-action@v3
-      - name: Update flake.lock
+      - name: Update sci flake.lock
         uses: DeterminateSystems/update-flake-lock@v25
         with:
-          pr-title: "Update flake.lock" # Title of PR to be created
+          path-to-flake-dir: "templates/sci"
+          pr-title: "Update sci flake.lock" # Title of PR to be created
+          pr-labels: |                  # Labels to be set on the PR
+            dependencies
+            automated
+      - name: Update sci_minimal flake.lock
+        uses: DeterminateSystems/update-flake-lock@v25
+        with:
+          path-to-flake-dir: "templates/sci_minimal"
+          pr-title: "Update sci_minimal flake.lock" # Title of PR to be created
           pr-labels: |                  # Labels to be set on the PR
             dependencies
             automated