From 765d53a1b17a91c504d01d8c4d2c27945af357aa Mon Sep 17 00:00:00 2001
From: Daniel Winkler <daniel.winkler@s.wu.ac.at>
Date: Sat, 31 Jan 2026 17:28:09 +1100
Subject: [PATCH] quarto setup

---
 ftplugin/quarto.lua       | 23 +++++++++++++++++++++++
 plugin/20_startup.lua     |  4 ++++
 plugin/21_datascience.lua |  8 ++++----
 snippets/quarto.json      | 13 +++++++++++++
 snippets/r.json           |  0
 5 files changed, 44 insertions(+), 4 deletions(-)
 create mode 100644 ftplugin/quarto.lua
 create mode 100644 snippets/quarto.json
 create mode 100644 snippets/r.json

diff --git a/ftplugin/quarto.lua b/ftplugin/quarto.lua
new file mode 100644
index 0000000..7ee10a0
--- /dev/null
+++ b/ftplugin/quarto.lua
@@ -0,0 +1,23 @@
+
+
+local quarto = require('quarto')
+quarto.setup()
+vim.keymap.set('n', '<leader>qp', quarto.quartoPreview, { silent = true, noremap = true })
+
+vim.keymap.set("n", "<Enter>", "<Plug>RDSendLine", { buffer = true })
+vim.keymap.set("v", "<Enter>", "<Plug>RSendSelection", { buffer = true })
+
+-- Assignment operator (--)
+vim.keymap.set("i", "--", "<Cmd>lua MiniTrailspace.trim()<CR><Plug>RInsertAssign", { buffer = true, noremap = true })
+
+-- Pipe operator (;;)
+vim.keymap.set("i", ";;", "<Cmd>lua MiniTrailspace.trim()<CR><Plug>RInsertPipe<CR>", { buffer = true, noremap = true })
+
+local runner = require("quarto.runner")
+vim.keymap.set("n", "<localleader>a", runner.run_cell,  { desc = "run cell", silent = true })
+vim.keymap.set("n", "<localleader>A", runner.run_all,   { desc = "run all cells", silent = true })
+vim.keymap.set("n", "<localleader>RA", function()
+  runner.run_all(true)
+end, { desc = "run all cells of all languages", silent = true })
+
+
diff --git a/plugin/20_startup.lua b/plugin/20_startup.lua
index 5ec11ac..ca18bd8 100644
--- a/plugin/20_startup.lua
+++ b/plugin/20_startup.lua
@@ -300,6 +300,9 @@ now_if_args(function()
       -- Use explicit buffer + filetype to avoid any ambiguity
       local ok = pcall(vim.treesitter.start, args.buf, args.match)
       vim.bo.syntax = 'on'
+      vim.bo.indentexpr = "v:lua.require'nvim-treesitter'.indentexpr()"
+      vim.wo[0][0].foldexpr = 'v:lua.vim.treesitter.foldexpr()'
+      vim.wo[0][0].foldmethod = 'expr'
     end,
   })
 
@@ -309,6 +312,7 @@ now_if_args(function()
     return
   end
 
+  vim.g.no_plugin_maps = true
   nto.setup({
     move = {
       set_jumps = true,
diff --git a/plugin/21_datascience.lua b/plugin/21_datascience.lua
index ddb93a8..118ee20 100644
--- a/plugin/21_datascience.lua
+++ b/plugin/21_datascience.lua
@@ -97,9 +97,9 @@ later(function()
         enabled = true,
       },
     },
-    -- codeRunner = {
-    --   enabled = true,
-    --   default_method = "slime",
-    -- },
+    codeRunner = {
+      enabled = true,
+      default_method = "slime",
+    },
   })
 end)
diff --git a/snippets/quarto.json b/snippets/quarto.json
new file mode 100644
index 0000000..51d3f9e
--- /dev/null
+++ b/snippets/quarto.json
@@ -0,0 +1,13 @@
+{
+  "Chunk": {
+    "R": {
+      "prefix": "_r",
+      "body": [
+        "```{r}",
+        "$1",
+        "```"
+      ],
+      "description": "R code block"
+    }
+  }
+}
diff --git a/snippets/r.json b/snippets/r.json
new file mode 100644
index 0000000..e69de29