init wrapper-module config

ftplugin/julia.lua

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+vim.b.slime_cell_delimiter = vim.b.slime_cell_delimiter or "# %%"
+
+local ts_lib = Config.treesitter_helpers
+
+local global_nodes_julia = { 'source_file', 'module_definition' }
+ts_lib.setup_keybindings(global_nodes_julia)

ftplugin/markdown.lua

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+-- Add the key mappings only for Markdown files in a zk notebook.
+if require("zk.util").notebook_root(vim.fn.expand('%:p')) ~= nil then
+  local map = vim.keymap.set
+  -- Open the link under the caret.
+  map("n", "<CR>", "<Cmd>lua vim.lsp.buf.definition()<CR>", { noremap = true, silent = false, buffer = true })
+
+  -- Create a new note after asking for its title.
+  -- This overrides the global `<leader>zn` mapping to create the note in the same directory as the current buffer.
+  map("n", "<leader>zhn", "<Cmd>ZkNew { dir = vim.fn.expand('%:p:h'), title = vim.fn.input('Title: ') }<CR>",
+    { noremap = true, silent = false, buffer = true, desc = "Note (here)" })
+  -- Create a new note in the same directory as the current buffer, using the current selection for title.
+  map("v", "<leader>zhnt", ":'<,'>ZkNewFromTitleSelection { dir = vim.fn.expand('%:p:h') }<CR>",
+    { noremap = true, silent = false, buffer = true, desc = "Note from selection (title)" })
+  -- Create a new note in the same directory as the current buffer, using the current selection for note content and asking for its title.
+  map("v", "<leader>zhnc",
+    ":'<,'>ZkNewFromContentSelection { dir = vim.fn.expand('%:p:h'), title = vim.fn.input('Title: ') }<CR>",
+    { noremap = true, silent = false, buffer = true, desc = "Note from selection (content)" })
+
+  -- Open notes linking to the current buffer.
+  map("n", "<leader>zb", "<Cmd>ZkBacklinks<CR>", { noremap = true, silent = false, buffer = true, desc = "Backlinks" })
+  -- Alternative for backlinks using pure LSP and showing the source context.
+  --map('n', '<leader>zb', '<Cmd>lua vim.lsp.buf.references()<CR>', opts)
+  -- Open notes linked by the current buffer.
+  map("n", "<leader>zL", "<Cmd>ZkLinks<CR>", { noremap = true, silent = false, buffer = true, desc = "Links" })
+  map("n", "<leader>zi", "<Cmd>ZkInsertLink<CR>", { noremap = true, silent = false, buffer = true, desc = "Insert link" })
+
+  -- Preview a linked note.
+  -- Open the code actions for a visual selection.
+  map("v", "<leader>za", ":'<,'>lua vim.lsp.buf.range_code_action()<CR>",
+    { noremap = true, silent = false, buffer = true, desc = "Code actions" })
+
+end

ftplugin/python.lua

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+
+vim.g.slime_python_ipython = 1
+vim.b.slime_cell_delimiter = vim.b.slime_cell_delimiter or "# %%"
+
+local ts_lib = Config.treesitter_helpers
+local global_nodes_python = { 'module' }
+ts_lib.setup_keybindings(global_nodes_python)
+
+local conform_format_group =
+  vim.api.nvim_create_augroup("PythonConformFormat_" .. vim.api.nvim_get_current_buf(), { clear = true })
+vim.api.nvim_create_autocmd("BufWritePre", {
+  group = conform_format_group,
+  buffer = 0,
+  callback = function()
+    require("conform").format({
+      timeout_ms = 1000,
+      lsp_format = "prefer",
+    })
+  end,
+})

ftplugin/r.lua

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+vim.b.slime_cell_delimiter = vim.b.slime_cell_delimiter or "## ----"
+
+local assign_action = function()
+  if vim.bo.filetype ~= "r" then
+    return
+  end
+
+  local ok, r_edit = pcall(require, "r.edit")
+  if not ok then
+    return
+  end
+
+  if MiniTrailspace and MiniTrailspace.trim then
+    MiniTrailspace.trim()
+  end
+  r_edit.assign()
+end
+
+vim.api.nvim_buf_create_user_command(0, "RAssign", assign_action, { desc = "Trim trailing space and insert <-" })
+-- Settings
+vim.bo.comments = [[:#',:####,:###,:##,:#]]
+
+-- Keymaps
+-- Note: These use <Plug> mappings provided by R.nvim
+vim.keymap.set("n", "<Enter>", "<Plug>RDSendLine", { buffer = true })
+vim.keymap.set("v", "<Enter>", "<Plug>RSendSelection", { buffer = true })
+
+-- Assignment operator (--)
+vim.keymap.set("i", "--", "<Cmd>lua MiniTrailspace.trim()<CR><Plug>RInsertAssign", { buffer = true, noremap = true })
+
+-- Pipe operator (;;)
+vim.keymap.set("i", ";;", "<Cmd>lua MiniTrailspace.trim()<CR><Plug>RInsertPipe<CR>", { buffer = true, noremap = true })
+
+-- MiniClue / WhichKey hints
+local r_clues = {
+  { mode = "n", keys = "<localleader>a", desc = "+batch" },
+  { mode = "n", keys = "<localleader>b", desc = "+between/debug" },
+  { mode = "n", keys = "<localleader>c", desc = "+substitute" },
+  { mode = "n", keys = "<localleader>f", desc = "+functions" },
+  { mode = "n", keys = "<localleader>i", desc = "+install" },
+  { mode = "n", keys = "<localleader>k", desc = "+knit" },
+  { mode = "n", keys = "<localleader>p", desc = "+paragraph" },
+  { mode = "n", keys = "<localleader>r", desc = "+regular" },
+  { mode = "n", keys = "<localleader>s", desc = "+selection" },
+  { mode = "n", keys = "<localleader>t", desc = "+dput" },
+  { mode = "n", keys = "<localleader>u", desc = "+undebug" },
+}
+
+vim.b.miniclue_config = {
+  clues = {
+    r_clues,
+  },
+  triggers = {
+    { mode = "n", keys = "<localleader>", desc = "+R" },
+  },
+}

ftplugin/sql.lua

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+vim.g.omni_sql_default_compl_type = "syntax"
+
+local ts_lib = Config.treesitter_helpers
+local global_nodes_sql = { 'program', 'cte' }
+ts_lib.setup_keybindings(global_nodes_sql)
+
+-- SQL specific keybindings
+vim.keymap.set({ 'n' }, '<localleader>;', function()
+    vim.api.nvim_call_function('slime#send', { ";\n" })
+  end,
+  { noremap = true, silent = true, desc = "SQL statment return", buffer = true })