.Rprofile

@@ -1,5 +0,0 @@
-if (Sys.getenv("RNVIM_TMPDIR") == "") {
-  options(defaultPackages = c("utils", "grDevices", "graphics", "stats", "methods"))
-} else {
-  options(defaultPackages = c("utils", "grDevices", "graphics", "stats", "methods", "nvimcom"))
-}

.commandcode/taste/taste.md

@@ -1,8 +0,0 @@
-# nix
-- For R.nvim in the Nix wrapper, both RNVIM_COMPLDIR (C server compilation) and a writable R_LIBS_USER directory (nvimcom R package installation) must be configured — fixing only one leaves permission errors in the other. Confidence: 0.65
-- For R.nvim writable directories (RNVIM_COMPLDIR, R_LIBS_USER, TMPDIR), prefer project-local paths (e.g., $PWD/.Rlibs) over global cache paths — the cache approach may let the build succeed but still fail at runtime. Confidence: 0.70
-
-# Taste (Continuously Learned by [CommandCode][cmd])
-
-[cmd]: https://commandcode.ai/
-

flake.lock

@@ -22,11 +22,11 @@
     },
     "nixpkgs": {
       "locked": {
-        "lastModified": 1778443072,
+        "lastModified": 1777954456,
-        "narHash": "sha256-zi7/fsqM/kFdNuED//4WOCUtezGtKKqRNORjMvfwjnA=",
+        "narHash": "sha256-hGdgeU2Nk87RAuZyYjyDjFL6LK7dAZN5RE9+hrDTkDU=",
         "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "da5ad661ba4e5ef59ba743f0d112cbc30e474f32",
+        "rev": "549bd84d6279f9852cae6225e372cc67fb91a4c1",
         "type": "github"
       },
       "original": {
@@ -69,29 +69,6 @@
         "type": "github"
       }
     },
-    "r-nvim-nix": {
-      "inputs": {
-        "nixpkgs": [
-          "rixpkgs"
-        ],
-        "rnvimsrc": [
-          "plugins-r"
-        ]
-      },
-      "locked": {
-        "lastModified": 1778641093,
-        "narHash": "sha256-Cq0spPQCYJkyHFTBTXqjmbq663kIVZA63/TQkTzE4ps=",
-        "owner": "dwinkler1",
-        "repo": "r_nvim_nix",
-        "rev": "435103d25d56dbe43197f7969cf535fda17ff597",
-        "type": "github"
-      },
-      "original": {
-        "owner": "dwinkler1",
-        "repo": "r_nvim_nix",
-        "type": "github"
-      }
-    },
     "rixpkgs": {
       "locked": {
         "lastModified": 1771303851,
@@ -103,8 +80,8 @@
       },
       "original": {
         "owner": "dwinkler1",
+        "ref": "nixpkgs",
         "repo": "rixpkgs",
-        "rev": "af2dd3f7b4b172077747c0869d4e30702fb71b0e",
         "type": "github"
       }
     },
@@ -114,7 +91,6 @@
         "nixpkgs": "nixpkgs",
         "plugins-cmp-pandoc-references": "plugins-cmp-pandoc-references",
         "plugins-r": "plugins-r",
-        "r-nvim-nix": "r-nvim-nix",
         "rixpkgs": "rixpkgs",
         "wrappers": "wrappers"
       }
@@ -126,11 +102,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1778560014,
+        "lastModified": 1777991014,
-        "narHash": "sha256-Hu9RMo7vJt/4dx/vAvyG+cE9RBwpaH1ouyunvruYaDI=",
+        "narHash": "sha256-0DS24OW9d9iz+w0LCz6KpS2IpE2z2gHxeBdMZg9xpDY=",
         "owner": "BirdeeHub",
         "repo": "nix-wrapper-modules",
-        "rev": "e30aa99c9c7038e16efae3cad7916a47307a9e36",
+        "rev": "dc5184095ad488e937ec308b52c9c0b218959d8b",
         "type": "github"
       },
       "original": {

flake.nix

@@ -10,11 +10,7 @@
       url = "github:BirdeeHub/nix-wrapper-modules";
       inputs.nixpkgs.follows = "nixpkgs";
     };
-    rixpkgs.url = "github:dwinkler1/rixpkgs/af2dd3f7b4b172077747c0869d4e30702fb71b0e";
+    rixpkgs.url = "github:dwinkler1/rixpkgs/nixpkgs";
-
-    r-nvim-nix.url = "github:dwinkler1/r_nvim_nix";
-    r-nvim-nix.inputs.rnvimsrc.follows = "plugins-r";
-    r-nvim-nix.inputs.nixpkgs.follows = "rixpkgs";
 
     fran = {
       url = "github:dwinkler1/fran";
@@ -50,7 +46,7 @@
         nix = true;
         optional = false;
         python = false;
-        r = true;
+        r = false;
       };
       settings = {
         lang_packages = {
@@ -65,7 +61,6 @@
             janitor
             languageserver
             styler
-            pkgs.nvimcom
           ];
           julia = ["DataFramesMeta" "QuackIO"];
         };
@@ -192,8 +187,6 @@
             air-formatter
             yaml-language-server
             updateR
-            nvimcom
-            rnvimserver
           ];
 
         juliaPackages = let
@@ -206,8 +199,7 @@
           zk
         ];
 
-        shellPackages =
+        shellPackages = [nvimPkg]
-          [nvimPkg]
           ++ pkgs.lib.optionals cfg.cats.python pythonPackages
           ++ pkgs.lib.optionals cfg.cats.r rPackages
           ++ pkgs.lib.optionals cfg.cats.julia juliaPackages
@@ -218,13 +210,7 @@
           packages = shellPackages;
           nativeBuildInputs = with pkgs; [] ++ (pkgs.lib.optionals cfg.cats.optional [devenv]);
           inputsFrom = [];
-          shellHook = ''
+          shellHook = "";
-            echo 'I am a NixShell'
-            export R_HOME=$(R RHOME)
-            export R_LIBS_SITE=$(strings "$(command -v R)" | grep -oP '/nix/store/[^:]+/library' | sort -u | paste -sd: -)
-            export R_LIBS_USER="$PWD/.r-libs"
-            mkdir -p "$R_LIBS_USER"
-          '';
         };
       }
     );

modules/module/settings/cats.nix

@@ -43,7 +43,7 @@
     nix = lib.mkDefault true;
     optional = lib.mkDefault false;
     python = lib.mkDefault false;
-    r = lib.mkDefault true;
+    r = lib.mkDefault false;
     test = lib.mkDefault false;
     treesitterParsers = lib.mkDefault true;
     utils = lib.mkDefault true;

modules/module/settings/env.nix

@@ -11,17 +11,12 @@
       UV_PYTHON_DOWNLOADS = "never";
       UV_PYTHON = pkgs.python.interpreter;
     })
-    (lib.mkIf (config.cats.r or false) {
-      RNVIM_COMPLDIR = "$PWD/.r-compl";
-      R_LIBS_USER = "${pkgs.nvimcom}/library:$PWD/.Rlibs";
-      TMPDIR = "$PWD/.r-tmp";
-    })
   ];
 
   # Environment variables with defaults (can be overridden by user)
   config.envDefault = lib.mkMerge [
     (lib.mkIf (config.cats.r or false) {
-      R_LIBS_USER = "${pkgs.nvimcom}/library:$PWD/.Rlibs";
+      R_LIBS_USER =  "./.Rlibs";
     })
   ];
 }

modules/module/specs/plugins.nix

@@ -11,13 +11,7 @@
 
   config.specs.r = {
     data = with pkgs.vimPlugins; [
-      (config.nvim-lib.neovimPlugins.r.overrideAttrs (old: {
+      config.nvim-lib.neovimPlugins.r
-        postInstall = (old.postInstall or "") + ''
-          mkdir -p $out/rnvimserver
-          cp ${pkgs.rnvimserver}/bin/rnvimserver $out/rnvimserver/rnvimserver
-          chmod +x $out/rnvimserver/rnvimserver
-        '';
-      }))
       quarto-nvim
       {
         data = otter-nvim;

overlays/default.nix

@@ -3,14 +3,12 @@ let
   lib = nixpkgs.lib;
 
   rOverlay = import ./r.nix {inherit inputs;};
-  rNvimNixOverlay = inputs.r-nvim-nix.overlays.default;
   franOverlay = inputs.fran.overlays.default;
   pythonOverlay = import ./python.nix inputs;
   pluginsOverlay = import ./plugins.nix inputs;
 
   dependencyOverlays = [
     rOverlay
-    rNvimNixOverlay
     pythonOverlay
     pluginsOverlay
   ];
@@ -19,7 +17,6 @@ in
 {
   inherit
     rOverlay
-    rNvimNixOverlay
     franOverlay
     pythonOverlay
     pluginsOverlay
@@ -33,7 +30,6 @@ in
   overlays = {
     inherit
       rOverlay
-      rNvimNixOverlay
       franOverlay
       pythonOverlay
       pluginsOverlay

overlays/r.nix

@@ -33,9 +33,6 @@
     overlays = [inputs.fran.overlays.default];
   }; # rixpkgs.legacyPackages.${prev.stdenv.hostPlatform.system};
 
-  # nvimcom and rnvimserver are provided by the r-nvim-nix flake overlay
-  # (inputs.r-nvim-nix.overlays.default)
-
   # Standard R packages used by default in rWrapper and quarto
   reqPkgs = with rpkgs.rPackages; [
     #    languageserver

plugin/21_datascience.lua

@@ -44,12 +44,6 @@ end)
 -- r
 now(function()
   if nix.get_cat("r", false) then
-    local cwd = vim.fn.getcwd(-1)
-    vim.env.RNVIM_COMPLDIR = cwd .. "/.r-compl"
-    vim.env.R_LIBS_USER = (vim.env.R_LIBS_USER or ""):gsub("%$PWD", cwd)
-    vim.env.TMPDIR = cwd .. "/.r-tmp"
-    vim.fn.mkdir(vim.env.RNVIM_COMPLDIR, "p")
-    vim.fn.mkdir(vim.env.TMPDIR, "p")
     vim.g.rout_follow_colorscheme = true
     require("r").setup({
       -- Create a table with the options to be passed to setup()