flake.lock: Update

Flake lock file updates:

• Updated input 'nixpkgs':
    'github:nixos/nixpkgs/4bd9165' (2026-04-14)
  → 'github:nixos/nixpkgs/15f4ee4' (2026-04-30)
• Updated input 'plugins-r':
    'github:R-nvim/R.nvim/b9cfffe' (2026-04-16)
  → 'github:R-nvim/R.nvim/93077db' (2026-05-03)
• Updated input 'wrappers':
    'github:BirdeeHub/nix-wrapper-modules/f11469c' (2026-04-16)
  → 'github:BirdeeHub/nix-wrapper-modules/b1308b5' (2026-05-03)

flake.lock

@@ -55,11 +55,11 @@
     "plugins-r": {
       "flake": false,
       "locked": {
-        "lastModified": 1777738411,
+        "lastModified": 1777830151,
-        "narHash": "sha256-EaeQXoY1VXwva4GQ14W71zlEX9MrEOGq1oe/V69Rzvc=",
+        "narHash": "sha256-Ux4Nslz1ts2EnhWylArClMHeVB+WsY0rfD5ZGMIYqoA=",
         "owner": "R-nvim",
         "repo": "R.nvim",
-        "rev": "72032fbe3732c6c1e0b8b21dd348408e392a543e",
+        "rev": "93077db270c44814ea7e3d9a66461665f8f2d74a",
         "type": "github"
       },
       "original": {
@@ -101,11 +101,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1777787239,
+        "lastModified": 1777827587,
-        "narHash": "sha256-L4L4qLa/6ck3v9FzkTQismT4ctyaQL+J0cHCEnU0Kos=",
+        "narHash": "sha256-Tz3QSgl1wwWH1jf0BngEkNhoWDIIWSBDE/RI+RpVemc=",
         "owner": "BirdeeHub",
         "repo": "nix-wrapper-modules",
-        "rev": "6316917effdaae39e3b483f798d20f1ddba52e5a",
+        "rev": "b1308b562306f59c7732357655d19cedb292d5e1",
         "type": "github"
       },
       "original": {

flake.nix

@@ -36,30 +36,24 @@
     wrappers,
     ...
   } @ inputs: let
-    wrapperSettings = pkgs: let
+    mkWrapperConfig = pkgs: {
-      def = pkgs.lib.mkDefault;
-    in
-      wrapper.config.wrap {
-        inherit pkgs;
       cats = {
-          clickhouse = def false;
+        clickhouse = false;
-          gitPlugins = def true;
+        gitPlugins = true;
-          julia = def false;
+        julia = false;
-          lua = def true;
+        lua = true;
-          markdown = def false;
+        markdown = false;
-          nix = def true;
+        nix = true;
-          optional = def false;
+        optional = false;
-          python = def false;
+        python = false;
-          r = def false;
+        r = false;
       };
-
       settings = {
         lang_packages = {
           python = with pkgs.python3Packages; [
             duckdb
             polars
           ];
-
           r = with pkgs.rpkgs.rPackages; [
             arrow
             broom
@@ -67,14 +61,33 @@
             janitor
             styler
           ];
-
           julia = ["DataFramesMeta" "QuackIO"];
         };
-          colorscheme = def "cyberdream";
+        colorscheme = "cyberdream";
-          background = def "dark";
+        background = "dark";
-          wrapRc = def true;
+        wrapRc = true;
       };
-        binName = def "vv";
+      binName = "vv";
+    };
+
+    wrapperSettings = pkgs: let
+      cfg = mkWrapperConfig pkgs;
+      def = pkgs.lib.mkDefault;
+    in
+      wrapper.config.wrap {
+        inherit pkgs;
+        cats = pkgs.lib.mapAttrs (_: v: def v) cfg.cats;
+        settings = {
+          lang_packages = {
+            python = def cfg.settings.lang_packages.python;
+            r = def cfg.settings.lang_packages.r;
+            julia = def cfg.settings.lang_packages.julia;
+          };
+          colorscheme = def cfg.settings.colorscheme;
+          background = def cfg.settings.background;
+          wrapRc = def cfg.settings.wrapRc;
+        };
+        binName = def cfg.binName;
       };
 
     systems = [
@@ -146,12 +159,55 @@
     devShells = forAllSystems (
       system: let
         pkgs = mkPkgs system;
+        cfg = mkWrapperConfig pkgs;
         nvimPkg = wrapperSettings pkgs;
+
+        pythonPackages = let
+          python_packages_fn =
+            if pkgs ? basePythonPackages
+            then ps: pkgs.basePythonPackages ps ++ cfg.settings.lang_packages.python
+            else _: cfg.settings.lang_packages.python;
+        in
+          with pkgs; [
+            (python3.withPackages python_packages_fn)
+            nodejs
+            ruff
+            basedpyright
+            uv
+          ];
+
+        rPackages = let
+          r_packages = (pkgs.baseRPackages or []) ++ cfg.settings.lang_packages.r;
+        in
+          with pkgs; [
+            (rWrapper.override {packages = r_packages;})
+            radianWrapper
+            (quarto.override {extraRPackages = r_packages;})
+            air-formatter
+            yaml-language-server
+            updateR
+          ];
+
+        juliaPackages = let
+          julia_with_packages = pkgs.julia-bin.withPackages cfg.settings.lang_packages.julia;
+        in [julia_with_packages];
+
+        markdownPackages = with pkgs; [
+          python313Packages.pylatexenc
+          quarto
+          zk
+        ];
+
+        shellPackages = [nvimPkg]
+          ++ pkgs.lib.optionals cfg.cats.python pythonPackages
+          ++ pkgs.lib.optionals cfg.cats.r rPackages
+          ++ pkgs.lib.optionals cfg.cats.julia juliaPackages
+          ++ pkgs.lib.optionals cfg.cats.markdown markdownPackages;
       in {
         default = pkgs.mkShell {
           name = "vShell";
-          packages = [nvimPkg];
+          packages = shellPackages;
-          nativeBuildInputs = with pkgs; [] ++ (pkgs.lib.optionals self.wrappers.default.cats.optional [devenv]);
+          nativeBuildInputs = with pkgs; [] ++ (pkgs.lib.optionals cfg.cats.optional [devenv]);
           inputsFrom = [];
           shellHook = "";
         };